DirectForwardFlux.h

#pragma once 

#include "Method.h"
#include "ForwardFlux.h"

namespace SSAGES
{

    class DirectForwardFlux : public ForwardFlux
    {
    protected:
        //-----------------------------------------------------------------
        // Private Variables
        //-----------------------------------------------------------------

        //std::vector<unsigned int> _M;

        //-----------------------------------------------------------------
        // Private Functions
        //-----------------------------------------------------------------
        
        void CheckForInterfaceCrossings(Snapshot*, const class CVManager&) override;

        void InitializeQueue(Snapshot*, const CVList&) override;

    public:

        DirectForwardFlux(const MPI_Comm& world,
                          const MPI_Comm& comm, 
                          double ninterfaces, std::vector<double> interfaces,
                          unsigned int N0Target, std::vector<unsigned int> M,
                          bool initialFluxFlag, bool saveTrajectories, 
                          unsigned int currentInterface, std::string output_directory, unsigned int frequency)
        : ForwardFlux(world, comm, ninterfaces, interfaces, N0Target, M, 
                    initialFluxFlag, saveTrajectories, currentInterface, output_directory, frequency) {}


        void PostIntegration(Snapshot* snapshot, const class CVManager& cvmanager) override;
        
        static DirectForwardFlux* Build(const Json::Value& json, 
                                            const MPI_Comm& world,
                                            const MPI_Comm& comm,
                                            const std::string& path);
    };
}

/*
File Formats:
_indexfile
interface(some integer) dump_file_name(a string that contains interface and trial number)
example: 1 dump_1_10.xyz

dumpfile
atomid posx posy posz vx vy vz


*/