SSAGES  0.1
A MetaDynamics Package
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SSAGES::DirectForwardFlux Member List

This is the complete list of members for SSAGES::DirectForwardFlux, including all inherited members.

_ASSAGES::ForwardFluxprotected
_current_interfaceSSAGES::ForwardFluxprotected
_cvvalueSSAGES::ForwardFluxprotected
_cvvalue_previousSSAGES::ForwardFluxprotected
_fluxA0SSAGES::ForwardFluxprotected
_generatorSSAGES::ForwardFluxprotected
_initialFluxFlagSSAGES::ForwardFluxprotected
_interfacesSSAGES::ForwardFluxprotected
_interfaces_increaseSSAGES::ForwardFluxprotected
_MSSAGES::ForwardFluxprotected
_NSSAGES::ForwardFluxprotected
_N0TargetSSAGES::ForwardFluxprotected
_N0TotalSimTimeSSAGES::ForwardFluxprotected
_nfailure_totalSSAGES::ForwardFluxprotected
_ninterfacesSSAGES::ForwardFluxprotected
_output_directorySSAGES::ForwardFluxprotected
_PSSAGES::ForwardFluxprotected
_pBSSAGES::ForwardFluxprotected
_pop_tried_but_empty_queueSSAGES::ForwardFluxprotected
_rateSSAGES::ForwardFluxprotected
_SSSAGES::ForwardFluxprotected
_saveTrajectoriesSSAGES::ForwardFluxprotected
_trajectory_fileSSAGES::ForwardFluxprotected
AddNewIDsToQueue()SSAGES::ForwardFluxprotected
AppendTrajectoryFile(Snapshot *, std::ofstream &)SSAGES::ForwardFluxprotected
Build(const Json::Value &json, const MPI_Comm &world, const MPI_Comm &comm, const std::string &path)SSAGES::DirectForwardFluxstatic
BuildMethod(const Json::Value &json, const MPI_Comm &world, const MPI_Comm &comm, const std::string &path)SSAGES::Methodstatic
CheckForInterfaceCrossings(Snapshot *, const class CVManager &) overrideSSAGES::DirectForwardFluxprotectedvirtual
CheckInitialStructure(const CVList &)SSAGES::ForwardFluxprotected
comm_SSAGES::Methodprotected
ComputeCommittorProbability(Snapshot *)SSAGES::ForwardFluxprotected
ComputeInitialFlux(Snapshot *, const CVList &)SSAGES::ForwardFluxprotected
ComputeTransitionProbabilities()SSAGES::ForwardFluxprotected
cvmask_SSAGES::Methodprotected
DirectForwardFlux(const MPI_Comm &world, const MPI_Comm &comm, double ninterfaces, std::vector< double > interfaces, unsigned int N0Target, std::vector< unsigned int > M, bool initialFluxFlag, bool saveTrajectories, unsigned int currentInterface, std::string output_directory, unsigned int frequency)SSAGES::DirectForwardFluxinline
EventListener(uint frequency)SSAGES::EventListenerinline
FFSConfigIDQueueSSAGES::ForwardFluxprotected
FluxBruteForce(Snapshot *, const CVList &)SSAGES::ForwardFluxprotected
ForwardFlux(const MPI_Comm &world, const MPI_Comm &comm, double ninterfaces, std::vector< double > interfaces, unsigned int N0Target, std::vector< unsigned int > M, bool initialFluxFlag, bool saveTrajectories, unsigned int currentInterface, std::string output_directory, unsigned int frequency)SSAGES::ForwardFluxinline
GetFrequency() const SSAGES::EventListenerinline
HasCrossedInterface(double, double, unsigned int interface)SSAGES::ForwardFluxprotected
HasReturnedToA(double)SSAGES::ForwardFluxprotected
InitializeQueue(Snapshot *, const CVList &) overrideSSAGES::DirectForwardFluxprotectedvirtual
initializeQueueFlag (defined in SSAGES::ForwardFlux)SSAGES::ForwardFluxprotected
iteration_SSAGES::ForwardFluxprotected
Lambda0ConfigLibrarySSAGES::ForwardFluxprotected
Method(uint frequency, const MPI_Comm &world, const MPI_Comm &comm)SSAGES::Methodinline
myFFSConfigIDSSAGES::ForwardFluxprotected
OpenTrajectoryFile(std::ofstream &)SSAGES::ForwardFluxprotected
PopQueueMPI(Snapshot *, const CVList &, unsigned)SSAGES::ForwardFluxprotected
PostIntegration(Snapshot *snapshot, const class CVManager &cvmanager) overrideSSAGES::DirectForwardFluxvirtual
PostSimulation(Snapshot *snapshot, const class CVManager &cvmanager) overrideSSAGES::ForwardFluxvirtual
PreSimulation(Snapshot *snapshot, const class CVManager &cvmanager) overrideSSAGES::ForwardFluxvirtual
PrintQueue()SSAGES::ForwardFluxprotected
ReadFFSConfiguration(Snapshot *, FFSConfigID &, bool)SSAGES::ForwardFluxprotected
ReconstructTrajectories(Snapshot *)SSAGES::ForwardFluxprotected
SetCVMask(const std::vector< uint > &mask)SSAGES::Methodinline
world_SSAGES::Methodprotected
WriteFFSConfiguration(Snapshot *snapshot, FFSConfigID &ffsconfig, bool wassuccess)SSAGES::ForwardFluxprotected
WriteInitialFlux()SSAGES::ForwardFluxprotected
~EventListener()SSAGES::EventListenerinlinevirtual
~Method()SSAGES::Methodinlinevirtual